If a master cylinder or piston shows any damage, replace them.

If a cup is worn, damaged softened (rotted), or swollen, the piston assembly should be replaced to renew the cups.
If fluid leakage is noted at the brake lever, the piston assembly should be replaced to renew the cups.
If they are damaged, replace them.
If the springs are damaged, replace them.
If the relief port becomes plugged, the brake pads will drag on the disc. Blow the ports clean with compressed air.
Front Master Cylinder [I] Rear Master Cylinder [J]

Rear Master Cylinder Installation
Brake DiscESD (Electronic Steering Damper) ECU Error (Service Code E3b, ZX1000JD/KD)
If this service code appears, check that the following parts
are correctly.
Crankshaft Sensor
Gear Position Switch
Starter Lockout Switch
Main Throttle Sensor
Rear Wheel Rotation Sensor
If these parts are normal, check the ESD ECU for its
ground and power supply (see ESD ECU Power Supply
...
Brake Pedal Removal
Remove:
Rear Master Cylinder Mounting Bolts [A]
Foot Guard [B]
Screw and Stopper [C]
Bolt [D]
Front Footpeg Bracket Bolts [E]
Cable Guide [F]
Remove:
Cotter Pin [A]
Joint Pin [B]
Rear Brake Light Switch Spring [C]
Return Spring [D]
Remove the brake pedal mounting b ...
Throttle Control System Inspection
Check the throttle grip free play [A].
If the free play is incorrect, adjust the throttle cables.
Throttle Grip Free Play
Standard: 2 3 mm (0.08
0.12 in.)
Check that the throttle grip [B] moves smoothly from full
open to close, and the throttle closes quickly and completely
by the ...