If a master cylinder or piston shows any damage, replace them.

If a cup is worn, damaged softened (rotted), or swollen, the piston assembly should be replaced to renew the cups.
If fluid leakage is noted at the brake lever, the piston assembly should be replaced to renew the cups.
If they are damaged, replace them.
If the springs are damaged, replace them.
If the relief port becomes plugged, the brake pads will drag on the disc. Blow the ports clean with compressed air.
Front Master Cylinder [I] Rear Master Cylinder [J]

Rear Master Cylinder Installation
Brake DiscFuel Injector Output Voltage Inspection
NOTE
Be sure the battery is fully charged.
Turn the ignition switch to OFF.
Remove the ECU (see ECU Removal).
Do not disconnect the ECU connector
Connect a digital meter [A] to the connector (gray) [B] with
the needle adapter set.
Special Tool - Needle Adapter Set: 57001-1457
...
Air Cleaner Housing Installation
For ZX1000JD/KD, be sure to install the pad [A].
Install the clamp bolt heads [A] inside as shown in the
figure.
Install the air cleaner housing on the throttle body assy.
Push in the ducts [B] touch the stoppers [C] of the throttle
body.
Be sure the hoses are routed correctly ...
Coolant Deterioration Inspection
Remove the right lower fairing (see Lower Fairing Removal
in the Frame chapter).
Visually inspect the coolant in the reserve tank [A].
If whitish cotton-like wafts are observed, aluminum parts
in the cooling system are corroded. If the coolant is
brown, iron or steel parts are rusting. I ...