If a master cylinder or piston shows any damage, replace them.

If a cup is worn, damaged softened (rotted), or swollen, the piston assembly should be replaced to renew the cups.
If fluid leakage is noted at the brake lever, the piston assembly should be replaced to renew the cups.
If they are damaged, replace them.
If the springs are damaged, replace them.
If the relief port becomes plugged, the brake pads will drag on the disc. Blow the ports clean with compressed air.
Front Master Cylinder [I] Rear Master Cylinder [J]

Rear Master Cylinder Installation
Brake DiscIntake Air Pressure Sensor #1 Removal
NOTICE
Never drop the intake air pressure sensor #1 especially
on a hard surface. Such a shock to the sensor
can damage it.
Remove:
Air Cleaner Housing (see Air Cleaner Housing Removal
in the Fuel System (DFI) chapter)
Intake Air Pressure Sensor #1 Connector [A]
Remove the intake air ...
Air Intake Duct Removal
Remove:
Upper Fairing Assembly (see Upper Fairing Assembly
Removal in the Frame chapter)
Meter Bracket (see Meter Unit Removal/Installation in
the Electrical System chapter)
Immobilizer Amplifier [A] (Equipped Models) (see Immobilizer
System Parts Replacement in the Electrical System
...
Tire Installation
WARNINGSome replacement tires may adversely
affect handling
and cause an accident resulting in serious injury
or death. To ensure proper handling and stability,
use only the recommended standard tires for
replacement, inflated to the standard pressure.
Inspect the rim ...