If a master cylinder or piston shows any damage, replace them.

If a cup is worn, damaged softened (rotted), or swollen, the piston assembly should be replaced to renew the cups.
If fluid leakage is noted at the brake lever, the piston assembly should be replaced to renew the cups.
If they are damaged, replace them.
If the springs are damaged, replace them.
If the relief port becomes plugged, the brake pads will drag on the disc. Blow the ports clean with compressed air.
Front Master Cylinder [I] Rear Master Cylinder [J]

Rear Master Cylinder Installation
Brake DiscStorage of Removed Parts
After all the parts including subassembly parts have been
cleaned, store the parts in a clean area. Put a clean cloth
or plastic sheet over the parts to protect from any foreign
materials that may collect before re-assembly.
Inspection
Reuse of worn or damaged parts may lead to serious acci ...
Air Intake Duct Removal
Remove:
Upper Fairing Assembly (see Upper Fairing Assembly
Removal in the Frame chapter)
Meter Bracket (see Meter Unit Removal/Installation in
the Electrical System chapter)
Immobilizer Amplifier [A] (Equipped Models) (see Immobilizer
System Parts Replacement in the Electrical System
...
Camshaft, Camshaft Cap Wear Inspection
Remove the camshaft caps (see Camshaft Removal).
Cut the strips of plastigage (press gauge) to journal width.
Place a strip on each journal parallel to the camshaft installed
in the correct position.
Tighten the camshaft cap bolts and upper camshaft chain
guide bolts to the specified ...